Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015918522.1_cds_XP_016467963.1_60656
CDS Infomation

[gene=LOC107790542] [db_xref=GeneID:107790542] [protein=RNA polymerase sigma factor sigF, chloroplastic-like isoform X2] [protein_id=XP_016467963.1] [location=join(30194..30293,32315..32385,32553..32680,32779..32985,33078..33348,33436..33666,33847..33987,34181..34381,35328..35615)] [gbkey=CDS]
Sequence

ATGGAGGCAGCTGGAAGAAACTTGCTTTCTTCACCACCAACAACTTTTTCTCATAAAACC
CAACTCAGCAGAAGTTCCCCTTCTTCCATTTCCTCTTCAGTTATCAATCCGGAGCAGCAG
TTTGAGAATCGGCTGCAATTACACTCGGTAAAGGAAGAGAAAACATCCCTGGCAACTATA
GATAGGCGGCTTGTGGAAGCTGCATCCTCAGCAATGGAAGAGAATGACGCTGTTGATTCG
GAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCGTTCGCCTGGTCTATCATATTTA
TTTTCCTCGTACCATCTGAAGGAAAAAGTACCACTAACTCTGGATACGGAATCTCTTTCC
GACAAGGGAGAGAAATTAATGAACTTCGAACCACACAACGTGGTTGCTCTTGCTAGAAAG
GCTTTGTTGGCATCAAGAGAGGCAGCATTATTAGCTGAGGACTCCAAATTACTTGGGACT
AACTTTGATGACTCTATTTTTCCAAATTTGCTGTCCACAAATTTGACTGATGATAAACTG
AAAGATCAAAGAATAGCGAGGTCAACACGTCTTCTAGAGAGGCGTTCTAAGAAAAGGGGA
GCTCCAACATCAAAACATCAAGTTCAGGAGACAAATCGTTCAGAGAGGCCAGATGTGCGG
AGAAGAGTGAACGAATCTATTGATCTTAATGATCCTCTTCGAATGTTTCTATGGGGTCCC
GAAACTAGACAACTTTTAACAGTCAAAGAGGAGTCCGAATTGATTGTCAAGATACAGAAT
ACCATGAAATTACAAGAAGTGAAGCATCGGCTTCAAACTCAGTTTGATCGTGAACCGACA
TTGATCGAGTGGGCTGAAGCTGCAGGACTTACTTCTCGAGAATTGCAGTCACAGCTTCGT
TCTGGCAAGAGCAGCCGTGACAAATTAATTAACGCCAATTTGCGAATGGTGGTTCATATT
GCTAAGCAATATCAAGGGCGTGGTCTCAGCCTTCAGGATTTATTGCAGGAGGGAAGCGTG
GGACTTATGAAGAGTGTCGAGAAGTTCAAGCCTCAAGCTGGTTGCCGATTTCCCACCTAT
GCATACTGGTGGATAAGGCAAGGAGTTAGGAAGGCCATATTTCAACATTCTAGGACAATT
CGTTTGCCAGAAAATGTGTATGCCCTACTCTCCAAGGTAAAAGACGCCAAAAAGTTATGC
ATCCAACAAGGTAATCATCATCCAACCAGAGAAGACATTGCTTCATGTGCTGGAATGAGT
GTGGAAAGGTTGCAGAGTCTGCTTTCAGCGGCTAGAACACCTCTTTCAATGCAACAGTCA
GTGTGGACAGATCAAGATGCTACTTTCCAGGAAATTACAGCTGACAATGCAATTGAAGCA
CCAGAACTGAGTGTGTCAAAGCAACTTATGAGGCGACACGTACGTAACCTTCTAAATGTT
CTGAGTCCAAAGGAGAGGAAGATAATCCGACTTAGATTTGGCATTGGAGATGGTGAACGA
AAGTCACTCTCTGAAATAGGTGCTGTTTTTGGACTGTCAAAGGAGCGAGTTCGACAGCTG
GAGAGCCGTGCACTATACAGGCTAAAGCAGAATCTTAGCAGCCATGGGCTTGATGCCTAT
AATGATTTGCTCTTTTAG

Peptide Sequence

PEP ID

XP_016467963.1
PEP Infomation

PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MEAAGRNLLSSPPTTFSHKTQLSRSSPSSISSSVINPEQQFENRLQLHSVKEEKTSLATI
DRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKVPLTLDTESLS
DKGEKLMNFEPHNVVALARKALLASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTDDKL
KDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLNDPLRMFLWGP
ETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLR
SGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTY
AYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMS
VERLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNV
LSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAY
NDLLF

Transcript Sequence

Gene sequence data has not been registered.